Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs4694849 chr4:47461747 C/T 0.000131 133 51.6 36.37 45.83 KM Plot
TGCT rs4728087 chr7:127778139 C/T 2.11E-9 133 42.18 37.53 12.55 KM Plot
TGCT rs4728088 chr7:127786367 T/C 1.8E-9 134 43.68 37.32 12.55 KM Plot
TGCT rs4731400 chr7:127777998 G/A 2.11E-9 133 42.18 37.53 12.55 KM Plot
TGCT rs4731401 chr7:127778512 G/A 2.11E-9 133 42.18 37.53 12.55 KM Plot
TGCT rs4731402 chr7:127783936 C/T 1.78E-9 134 12.55 37.53 42.27 KM Plot
TGCT rs4731403 chr7:127786493 G/A 1.8E-9 134 43.68 37.32 12.55 KM Plot
TGCT rs4731405 chr7:127787365 A/G 9.36E-5 134 43.68 37.1 17.1 KM Plot
TGCT rs4759441 chr12:130747250 G/A 0.000104 131 51.32 37.2 20.6 KM Plot
TGCT rs4759442 chr12:130747364 G/A 0.000104 131 51.32 37.2 20.6 KM Plot
TGCT rs4759642 chr12:130754531 A/G 9.02E-5 134 20.6 41.42 46.77 KM Plot
TGCT rs4772711 chr13:106455106 A/G 1.38E-5 134 41.27 62.67 109.55 KM Plot
TGCT rs4799374 chr18:32822382 G/T 1.56E-5 134 21.43 29.8 49.93 KM Plot
TGCT rs4799788 chr18:32784291 C/T 9.74E-5 132 17.1 27.1 50.97 KM Plot
TGCT rs4801759 chr19:37954985 G/A 1.37E-13 134 45.47 37.53 17.1 KM Plot